added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index 0255bd2409c043abfa1a7d261aa2910c78f9440e..2223593c4e7758ac48844dbf7d5093b20f361b5d 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -48,7 +48,7 @@ private:
        
        Classify* classify;
        
-       string fastaFileName, templateFileName, distanceFileName, namefile, search, method, taxonomyFileName;
+       string fastaFileName, templateFileName, distanceFileName, namefile, search, method, taxonomyFileName, outputDir;
        int processors, kmerSize, numWanted, cutoff, iters;
        float match, misMatch, gapOpen, gapExtend;
        bool abort, probs;