removed unused copy constructors and comments within comments that where causing...

[mothur.git] / chopseqscommand.cpp

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index 68576cdb521efc994bedf2d3b2d40cc98a740b9c..4e06201cd352104b5ee9c9d1c41764d16473003e 100644 (file)
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -233,7 +233,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
                                        
                                        for (int i = 0; i < temp.length(); i++) {
                                                //eliminate N's
-                                               if (toupper(temp[i]) == 'N') { temp[i] == '.'; }
+                                               if (toupper(temp[i]) == 'N') { temp[i] = '.'; }
                                                
                                                numBasesCounted++; 
                                                
@@ -255,7 +255,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
                                        
                                        for (int i = (temp.length()-1); i >= 0; i--) {
                                                //eliminate N's
-                                               if (toupper(temp[i]) == 'N') { temp[i] == '.'; }
+                                               if (toupper(temp[i]) == 'N') { temp[i] = '.'; }
                                                
                                                numBasesCounted++; 
 
@@ -283,7 +283,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
                                        for (int i = 0; i < temp.length(); i++) {
                                                //eliminate N's
                                                if (toupper(temp[i]) == 'N') { 
-                                                       temp[i] == '.'; 
+                                                       temp[i] = '.'; 
                                                        tempLength--;
                                                        if (tempLength < numbases) { stopSpot = 0; break; }
                                                }
@@ -309,7 +309,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
                                        for (int i = (temp.length()-1); i >= 0; i--) {
                                                //eliminate N's
                                                if (toupper(temp[i]) == 'N') { 
-                                                       temp[i] == '.'; 
+                                                       temp[i] = '.'; 
                                                        tempLength--;
                                                        if (tempLength < numbases) { stopSpot = 0; break; }
                                                }