added template=self capability to chimers.slayer, worked on corr.axes and added accno...

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index aa9b5e7102a324bce97095c2fce7d78f470ab3fc..9ff0c8ffb0753f799133b3ee54424f0a7aff8345 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -49,7 +49,7 @@ private:
        #endif
 
        bool abort, realign;
-       string fastafile, templatefile, outputDir, search;
+       string fastafile, templatefile, outputDir, search, namefile;
        int processors, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
        float divR;
        Chimera* chimera;
@@ -57,6 +57,7 @@ private:
        vector<string> outputNames;
        map<string, vector<string> > outputTypes;
        vector<string> fastaFileNames;
+       vector<string> nameFileNames;
        
 };