X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraslayercommand.h;h=9ff0c8ffb0753f799133b3ee54424f0a7aff8345;hp=aa9b5e7102a324bce97095c2fce7d78f470ab3fc;hb=de67504f85e091a3049ef4c5df8e77f7dcb1d814;hpb=136158a07155d3484f9318b553c38e57405f9a3d

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index aa9b5e7..9ff0c8f 100644
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -49,7 +49,7 @@ private:
 	#endif
 
 	bool abort, realign;
-	string fastafile, templatefile, outputDir, search;
+	string fastafile, templatefile, outputDir, search, namefile;
 	int processors, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
 	float divR;
 	Chimera* chimera;
@@ -57,6 +57,7 @@ private:
 	vector<string> outputNames;
 	map<string, vector<string> > outputTypes;
 	vector<string> fastaFileNames;
+	vector<string> nameFileNames;
 	
 };