pat's edits from 1/26/2010

[mothur.git] / chimeraslayer.cpp

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 9b85b5cd4da6dc6e4bc28fcc9d279bbd768da7c5..ab4bd1fa18806f6650a3d75ed7efe95c4284d7e1 100644 (file)
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -33,11 +33,12 @@ void ChimeraSlayer::print(ostream& out) {
                for (int i = 0; i < querySeqs.size(); i++) {
                
                        if (chimeraFlags[i] == "yes") { 
+                               cout << i << endl;
                                if ((chimeraResults[i][0].bsa >= 90.0) || (chimeraResults[i][0].bsb >= 90.0)) {
                                        mothurOut(querySeqs[i]->getName() + "\tyes"); mothurOutEndLine();
                                        out << querySeqs[i]->getName() << "\tyes" << endl;
                                }else {
-                                       out << querySeqs[i]->getName() << "\tno" << endl;
+                                       out << querySeqs[i]->getName() << "\tyes" << endl;
                                        //mothurOut(querySeqs[i]->getName() + "\tno"); mothurOutEndLine();
                                }