X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraslayer.cpp;h=ab4bd1fa18806f6650a3d75ed7efe95c4284d7e1;hp=9b85b5cd4da6dc6e4bc28fcc9d279bbd768da7c5;hb=c99f3846e7a7b6f06ab46508baa5409204ad6290;hpb=ee4dd201fa4f2c4ede5b2e525c82cce0a37de363

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 9b85b5c..ab4bd1f 100644
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -33,11 +33,12 @@ void ChimeraSlayer::print(ostream& out) {
 		for (int i = 0; i < querySeqs.size(); i++) {
 		
 			if (chimeraFlags[i] == "yes") {	
+				cout << i << endl;
 				if ((chimeraResults[i][0].bsa >= 90.0) || (chimeraResults[i][0].bsb >= 90.0)) {
 					mothurOut(querySeqs[i]->getName() + "\tyes"); mothurOutEndLine();
 					out << querySeqs[i]->getName() << "\tyes" << endl;
 				}else {
-					out << querySeqs[i]->getName() << "\tno" << endl;
+					out << querySeqs[i]->getName() << "\tyes" << endl;
 					//mothurOut(querySeqs[i]->getName() + "\tno"); mothurOutEndLine();
 				}