random chagnes from pat

[mothur.git] / chimeraslayer.cpp

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index b334f909a7411d6dd00b3eda311740b7e93a80b8..61ad0e0ce7626512e3d9e1cd4e70288acaee1049 100644 (file)
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -259,6 +259,7 @@ int ChimeraSlayer::doPrep() {
                
                        //generate blastdb
                        databaseLeft = new BlastDB(-1.0, -1.0, 1, -3);
+
                        for (int i = 0; i < templateSeqs.size(); i++) {         databaseLeft->addSequence(*templateSeqs[i]);    }
                        databaseLeft->generateDB();
                        databaseLeft->setNumSeqs(templateSeqs.size());
@@ -385,6 +386,7 @@ vector<Sequence*> ChimeraSlayer::getTemplate(Sequence* q) {
                        
                        //generate blastdb
                        databaseLeft = new BlastDB(-1.0, -1.0, 1, -3);
+
                        for (int i = 0; i < thisTemplate.size(); i++) { if (m->control_pressed) { return thisTemplate; }  databaseLeft->addSequence(*thisTemplate[i]);  }
                        databaseLeft->generateDB();
                        databaseLeft->setNumSeqs(thisTemplate.size());