committing so I can work on the other machine

[mothur.git] / chimeraslayer.cpp

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 2c4f7fba4253c2cb4c2693bb3cb18e676c5d938b..5295eace3546e14db6488ceb41e144915531c830 100644 (file)
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -286,13 +286,13 @@ int ChimeraSlayer::getChimeras(Sequence* query) {
                //referenceSeqs, numWanted, matchScore, misMatchPenalty, divR, minSimilarity
                maligner = new Maligner(templateSeqs, numWanted, match, misMatch, divR, minSim, minCov, searchMethod, databaseLeft, databaseRight);
                slayer = new Slayer(window, increment, minSim, divR, iters, minSNP);
-               
+       
                if (m->control_pressed) {  return 0;  }
                
                string chimeraFlag = maligner->getResults(query, decalc);
                if (m->control_pressed) {  return 0;  }
                vector<results> Results = maligner->getOutput();
-                               
+                       
                //found in testing realigning only made things worse
                if (realign) {
                        ChimeraReAligner realigner(templateSeqs, match, misMatch);