X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraslayer.cpp;h=5295eace3546e14db6488ceb41e144915531c830;hp=2c4f7fba4253c2cb4c2693bb3cb18e676c5d938b;hb=6de5adaae66b28aa60a75f123005cede410c156c;hpb=2a07f8664a7fd1ef0d572b88e8b5bede24cc0b3c

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 2c4f7fb..5295eac 100644
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -286,13 +286,13 @@ int ChimeraSlayer::getChimeras(Sequence* query) {
 		//referenceSeqs, numWanted, matchScore, misMatchPenalty, divR, minSimilarity
 		maligner = new Maligner(templateSeqs, numWanted, match, misMatch, divR, minSim, minCov, searchMethod, databaseLeft, databaseRight);
 		slayer = new Slayer(window, increment, minSim, divR, iters, minSNP);
-		
+	
 		if (m->control_pressed) {  return 0;  }
 		
 		string chimeraFlag = maligner->getResults(query, decalc);
 		if (m->control_pressed) {  return 0;  }
 		vector<results> Results = maligner->getOutput();
-				
+			
 		//found in testing realigning only made things worse
 		if (realign) {
 			ChimeraReAligner realigner(templateSeqs, match, misMatch);