added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index f19a79d230642894a8bbb7ab9d459f43368fd5dd..46e2bc88300c7a3e89f8fb985100d6edd50129a1 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -28,7 +28,7 @@ public:
 private:
        
        bool abort;
-       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile;
+       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile, outputDir;
        bool filter, correction, svg, printAll;
        int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
        float divR;