working on chimera change to add trim feature, fixed bug in print of distance file...

[mothur.git] / chimerapintailcommand.cpp

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index abab7a3ddc9dba00b9981cc1df7b464084be902b..c5e579e730e1cfbd3da0040359393ef08b497295 100644 (file)
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -382,7 +382,7 @@ int ChimeraPintailCommand::execute(){
                        templateSeqsLength = chimera->getLength();
                
                #ifdef USE_MPI
-                       int pid, end, numSeqsPerProcessor; 
+                       int pid, numSeqsPerProcessor; 
                                int tag = 2001;
                                vector<unsigned long int> MPIPos;
                                
@@ -631,7 +631,7 @@ int ChimeraPintailCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_Fi
                                        if (m->control_pressed) {       delete candidateSeq; return 1;  }
                
                                        //print results
-                                       bool isChimeric = chimera->print(outMPI, outAccMPI);
+                                       chimera->print(outMPI, outAccMPI);
                                }
                        }
                        delete candidateSeq;