created mothurOut class to handle logfiles

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index 8c00aecf720433bec4610968bc1c227bc93d5a03..f6a5180975b134d7c5928dca4343e0a1f62074da 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -88,10 +88,10 @@ class Chimera {
 
        public:
        
-               Chimera(){};
-               Chimera(string);
-               Chimera(string, bool, string);
-               Chimera(string, string);
+               Chimera(){ m = MothurOut::getInstance(); }
+               Chimera(string) { m = MothurOut::getInstance(); }
+               Chimera(string, bool, string) { m = MothurOut::getInstance(); }
+               Chimera(string, string) { m = MothurOut::getInstance(); }
                virtual ~Chimera(){     for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i];  } };
                virtual void setFilter(bool f)                  {       filter = f;                     }
                virtual void setCorrection(bool c)              {       correction = c;         }
@@ -138,6 +138,7 @@ class Chimera {
                float divR;
                string seqMask, quanfile, filterString, name, outputDir, templateFileName;
                Sequence* getSequence(string);  //find sequence from name       
+               MothurOut* m;
 };
 
 /***********************************************************************/