working on chimera change to add trim feature, fixed bug in print of distance file...

[mothur.git] / ccode.cpp

diff --git a/ccode.cpp b/ccode.cpp
index 15e482a505494574dddbe56f995d3880e9557ac0..e82018409013f59bc4ce9f80474e99d22e111f21 100644 (file)
--- a/ccode.cpp
+++ b/ccode.cpp
@@ -74,7 +74,7 @@ Ccode::~Ccode() {
        #endif
 }      
 //***************************************************************************************************************
-int Ccode::print(ostream& out, ostream& outAcc) {
+Sequence* Ccode::print(ostream& out, ostream& outAcc) {
        try {
                
                ofstream out2;
@@ -155,7 +155,7 @@ int Ccode::print(ostream& out, ostream& outAcc) {
                //free memory
                for (int i = 0; i < closest.size(); i++) {  delete closest[i].seq;  }
 
-               return results;
+               return NULL;
        }
        catch(exception& e) {
                m->errorOut(e, "Ccode", "print");
@@ -164,7 +164,7 @@ int Ccode::print(ostream& out, ostream& outAcc) {
 }
 #ifdef USE_MPI
 //***************************************************************************************************************
-int Ccode::print(MPI_File& out, MPI_File& outAcc) {
+Sequence* Ccode::print(MPI_File& out, MPI_File& outAcc) {
        try {
                
                string outMapString = "";
@@ -263,7 +263,7 @@ int Ccode::print(MPI_File& out, MPI_File& outAcc) {
                //free memory
                for (int i = 0; i < closest.size(); i++) {  delete closest[i].seq;  }
 
-               return results;
+               return NULL;
        }
        catch(exception& e) {
                m->errorOut(e, "Ccode", "print");
@@ -280,6 +280,8 @@ int Ccode::printMapping(string& output) {
                                
                        MPI_File_write_shared(outMap, buf, length, MPI_CHAR, &status);
                        delete buf;
+                       
+                       return 0;
 
        }
        catch(exception& e) {