changes while testing

[mothur.git] / alignmentdb.h

diff --git a/alignmentdb.h b/alignmentdb.h
index d665f788764f6ea228ad70bb99867602820a16c5..537af8d21548e118a8d7470133be1acd4aab11fb 100644 (file)
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -20,7 +20,8 @@ class AlignmentDB {
 
 public:
 
-       AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+       AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
+       AlignmentDB(string);
        ~AlignmentDB();
        
        Sequence findClosestSequence(Sequence*);
@@ -28,8 +29,8 @@ public:
        int getLongestBase()    {  return longest;  }
        
 private:
-       int numSeqs, longest;
-       float searchScore;
+       int numSeqs, longest, threadID;
+       string method;
        
        Database* search;
        vector<Sequence> templateSequences;