X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=alignmentdb.h;h=537af8d21548e118a8d7470133be1acd4aab11fb;hp=d665f788764f6ea228ad70bb99867602820a16c5;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0

diff --git a/alignmentdb.h b/alignmentdb.h
index d665f78..537af8d 100644
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -20,7 +20,8 @@ class AlignmentDB {
 
 public:
 
-	AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string);
 	~AlignmentDB();
 	
 	Sequence findClosestSequence(Sequence*);
@@ -28,8 +29,8 @@ public:
 	int getLongestBase()	{  return longest;  }
 	
 private:
-	int numSeqs, longest;
-	float searchScore;
+	int numSeqs, longest, threadID;
+	string method;
 	
 	Database* search;
 	vector<Sequence> templateSequences;