created mothurOut class to handle logfiles

[mothur.git] / alignment.hpp

diff --git a/alignment.hpp b/alignment.hpp
index 6dd7f0aed42938bd94a50bc6d4ebf88eda1c2b40..7a943fd0037430991a7baab418474e78a496d403 100644 (file)
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -49,6 +49,7 @@ protected:
        int pairwiseLength;
        int nRows, nCols, lA, lB;
        vector<vector<AlignmentCell> > alignment;
+       MothurOut* m;
 };
 
 /**************************************************************************************************/