]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
added the Calculators Thomas made in the fall. Added parameter and command error...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index 3c32966ef460ac5ac4617ae16014c43ebd0cc851..b34805bab97accaebdd0b539420c7f0dfd4ca03d 100644 (file)
@@ -7,11 +7,6 @@
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                                37D927DF0F21331F001D4494 /* globaldata.cpp */,
-                               3765B5440F7A62A000C3EDC5 /* heatmap.h */,
-                               3765B5450F7A62A000C3EDC5 /* heatmap.cpp */,
                                37D927E60F21331F001D4494 /* inputdata.h */,
                                37D927E50F21331F001D4494 /* inputdata.cpp */,
                                37D927EA0F21331F001D4494 /* kmer.hpp */,
                                37D928210F21331F001D4494 /* shared.h */,
                                37D928200F21331F001D4494 /* shared.cpp */,
                                37D928420F21331F001D4494 /* singlelinkage.cpp */,
+                               37D928450F21331F001D4494 /* sparsematrix.hpp */,
+                               37D928440F21331F001D4494 /* sparsematrix.cpp */,
                                37D928480F21331F001D4494 /* summarydata.h */,
                                37D928490F21331F001D4494 /* summarydisplay.h */,
                                37D9284C0F21331F001D4494 /* utilities.hpp */,
                                37D927BB0F21331F001D4494 /* bootstrap.cpp */,
                                37D927C00F21331F001D4494 /* chao1.h */,
                                37D927BF0F21331F001D4494 /* chao1.cpp */,
-                               374CD6EF0F65A4C100D90B4A /* coverage.h */,
-                               374CD6F00F65A4C100D90B4A /* coverage.cpp */,
+                               EB9303F70F53517300E8EF26 /* geom.h */,
+                               EB9303F80F53517300E8EF26 /* geom.cpp */,
+                               EB6E68170F5F1C780044E17B /* qstat.h */,
+                               EB6E68180F5F1C780044E17B /* qstat.cpp */,
+                               EB9303E90F534D9400E8EF26 /* logsd.h */,
+                               EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
+                               EB1216860F619B83004A865F /* bergerparker.h */,
+                               EB1216870F619B83004A865F /* bergerparker.cpp */,
+                               EB1216E30F61ACFB004A865F /* bstick.h */,
+                               EB1216E40F61ACFB004A865F /* bstick.cpp */,
+                               EB1217210F61C9AC004A865F /* sharedkstest.h */,
+                               EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
+                               EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
+                               EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
+                               EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */,
+                               EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */,
                                37D927E80F21331F001D4494 /* jackknife.h */,
                                37D927E70F21331F001D4494 /* jackknife.cpp */,
                                37D927F50F21331F001D4494 /* npshannon.h */,
                                37D927F40F21331F001D4494 /* npshannon.cpp */,
-                               370936DE0F6E7A4A00EB4C2C /* nseqs.h */,
                                379294880F2E258500B9034A /* parsimony.h */,
                                379294890F2E258500B9034A /* parsimony.cpp */,
                                37D928020F21331F001D4494 /* rarecalc.h */,
                                37D9281E0F21331F001D4494 /* shannon.cpp */,
                                37D928230F21331F001D4494 /* sharedace.h */,
                                37D928220F21331F001D4494 /* sharedace.cpp */,
-                               3765B5140F780A7F00C3EDC5 /* sharedanderberg.h */,
-                               3765B5150F780A7F00C3EDC5 /* sharedanderberg.cpp */,
-                               2175956F0F792A33001CC3C6 /* sharedbraycurtis.h */,
-                               217595700F792A33001CC3C6 /* sharedbraycurtis.cpp */,
                                37D928250F21331F001D4494 /* sharedchao1.h */,
                                37D928240F21331F001D4494 /* sharedchao1.cpp */,
                                37D928290F21331F001D4494 /* sharedjabund.h */,
                                37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
                                37D9282D0F21331F001D4494 /* sharedjest.h */,
                                37D9282C0F21331F001D4494 /* sharedjest.cpp */,
-                               217595310F791EEE001CC3C6 /* sharedkulczynski.h */,
-                               217595320F791EEE001CC3C6 /* sharedkulczynski.cpp */,
-                               2175953D0F792111001CC3C6 /* sharedkulczynskicody.h */,
-                               2175953E0F792111001CC3C6 /* sharedkulczynskicody.cpp */,
-                               217595570F792490001CC3C6 /* sharedlennon.h */,
-                               217595580F792490001CC3C6 /* sharedlennon.cpp */,
-                               217595620F7927BB001CC3C6 /* sharedmorisitahorn.h */,
-                               217595630F7927BB001CC3C6 /* sharedmorisitahorn.cpp */,
-                               3709370A0F6E7FC100EB4C2C /* sharednseqs.h */,
-                               3765B4E00F78055000C3EDC5 /* sharedochiai.h */,
-                               3765B4E10F78055000C3EDC5 /* sharedochiai.cpp */,
                                37D928350F21331F001D4494 /* sharedsobs.h */,
                                37D928340F21331F001D4494 /* sharedsobs.cpp */,
                                37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
                                A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
                                A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
                                A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
-                               3765B5360F7A5A9E00C3EDC5 /* heatmapcommand.h */,
-                               3765B5370F7A5A9E00C3EDC5 /* heatmapcommand.cpp */,
                                37D927E40F21331F001D4494 /* helpcommand.h */,
                                37D927E30F21331F001D4494 /* helpcommand.cpp */,
-                               374CD63D0F65832000D90B4A /* libshuffcommand.h */,
-                               374CD63E0F65832000D90B4A /* libshuffcommand.cpp */,
-                               3765B4790F77D15900C3EDC5 /* nocommands.h */,
-                               3765B4780F77D15900C3EDC5 /* nocommands.cpp */,
                                37D927FA0F21331F001D4494 /* parselistcommand.h */,
                                37D927F90F21331F001D4494 /* parselistcommand.cpp */,
                                3792946E0F2E191800B9034A /* parsimonycommand.h */,
                                37D927D50F21331F001D4494 /* datavector.hpp */,
                                37D927DC0F21331F001D4494 /* fastamap.h */,
                                37D927DB0F21331F001D4494 /* fastamap.cpp */,
-                               3782163B0F616079008E1F6D /* fullmatrix.h */,
-                               3782163C0F616079008E1F6D /* fullmatrix.cpp */,
                                37D927E20F21331F001D4494 /* groupmap.h */,
                                37D927E10F21331F001D4494 /* groupmap.cpp */,
                                37D927EE0F21331F001D4494 /* listvector.hpp */,
                                37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
                                37D928330F21331F001D4494 /* sharedsabundvector.h */,
                                37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
-                               37D928450F21331F001D4494 /* sparsematrix.hpp */,
-                               37D928440F21331F001D4494 /* sparsematrix.cpp */,
                                37AD4DB90F28E2FE00AA2D49 /* tree.h */,
                                37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
                                379293C10F2DE73400B9034A /* treemap.h */,
                                A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
                                A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
                                A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
-                               3782163D0F616079008E1F6D /* fullmatrix.cpp in Sources */,
-                               374CD63F0F65832000D90B4A /* libshuffcommand.cpp in Sources */,
-                               374CD6F10F65A4C100D90B4A /* coverage.cpp in Sources */,
-                               3765B47A0F77D15900C3EDC5 /* nocommands.cpp in Sources */,
-                               3765B4E20F78055000C3EDC5 /* sharedochiai.cpp in Sources */,
-                               3765B5160F780A7F00C3EDC5 /* sharedanderberg.cpp in Sources */,
-                               217595330F791EEE001CC3C6 /* sharedkulczynski.cpp in Sources */,
-                               2175953F0F792111001CC3C6 /* sharedkulczynskicody.cpp in Sources */,
-                               217595590F792490001CC3C6 /* sharedlennon.cpp in Sources */,
-                               217595640F7927BB001CC3C6 /* sharedmorisitahorn.cpp in Sources */,
-                               217595710F792A33001CC3C6 /* sharedbraycurtis.cpp in Sources */,
-                               3765B5380F7A5A9E00C3EDC5 /* heatmapcommand.cpp in Sources */,
-                               3765B5460F7A62A000C3EDC5 /* heatmap.cpp in Sources */,
+                               EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
+                               EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
+                               EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
+                               EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
+                               EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
+                               EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
+                               EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
+                               EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };
                                GCC_DYNAMIC_NO_PIC = NO;
                                GCC_ENABLE_FIX_AND_CONTINUE = YES;
                                GCC_MODEL_TUNING = G5;
-                               GCC_OPTIMIZATION_LEVEL = 3;
+                               GCC_OPTIMIZATION_LEVEL = 0;
                                GCC_PREPROCESSOR_DEFINITIONS = (
                                        "_GLIBCXX_DEBUG=1",
                                        "_GLIBCXX_DEBUG_PEDANTIC=1",
                        buildSettings = {
                                DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
                                GCC_MODEL_TUNING = G5;
-                               GCC_OPTIMIZATION_LEVEL = 3;
                                INSTALL_PATH = /usr/local/bin;
                                PRODUCT_NAME = mothur;
                        };
                                GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                GCC_WARN_UNUSED_VARIABLE = YES;
-                               INSTALL_MODE_FLAG = "a-w,a+rX";
                                PREBINDING = NO;
                                SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
                        };
                                GCC_OPTIMIZATION_LEVEL = 0;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                GCC_WARN_UNUSED_VARIABLE = YES;
-                               INSTALL_MODE_FLAG = "a-w,a+rX";
                                PREBINDING = NO;
                                SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
                        };