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2175953E0F792111001CC3C6 /* sharedkulczynskicody.cpp */, - 217595570F792490001CC3C6 /* sharedlennon.h */, - 217595580F792490001CC3C6 /* sharedlennon.cpp */, - 217595620F7927BB001CC3C6 /* sharedmorisitahorn.h */, - 217595630F7927BB001CC3C6 /* sharedmorisitahorn.cpp */, - 3709370A0F6E7FC100EB4C2C /* sharednseqs.h */, - 3765B4E00F78055000C3EDC5 /* sharedochiai.h */, - 3765B4E10F78055000C3EDC5 /* sharedochiai.cpp */, 37D928350F21331F001D4494 /* sharedsobs.h */, 37D928340F21331F001D4494 /* sharedsobs.cpp */, 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */, @@ -527,14 +508,8 @@ A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */, A70B53A90F4CD7AD0064797E /* getlinecommand.h */, A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */, - 3765B5360F7A5A9E00C3EDC5 /* heatmapcommand.h */, - 3765B5370F7A5A9E00C3EDC5 /* heatmapcommand.cpp */, 37D927E40F21331F001D4494 /* helpcommand.h */, 37D927E30F21331F001D4494 /* helpcommand.cpp */, - 374CD63D0F65832000D90B4A /* libshuffcommand.h */, - 374CD63E0F65832000D90B4A /* libshuffcommand.cpp */, - 3765B4790F77D15900C3EDC5 /* nocommands.h */, - 3765B4780F77D15900C3EDC5 /* nocommands.cpp */, 37D927FA0F21331F001D4494 /* parselistcommand.h */, 37D927F90F21331F001D4494 /* parselistcommand.cpp */, 3792946E0F2E191800B9034A /* parsimonycommand.h */, @@ -571,8 +546,6 @@ 37D927D50F21331F001D4494 /* datavector.hpp */, 37D927DC0F21331F001D4494 /* fastamap.h */, 37D927DB0F21331F001D4494 /* fastamap.cpp */, - 3782163B0F616079008E1F6D /* fullmatrix.h */, - 3782163C0F616079008E1F6D /* fullmatrix.cpp */, 37D927E20F21331F001D4494 /* groupmap.h */, 37D927E10F21331F001D4494 /* groupmap.cpp */, 37D927EE0F21331F001D4494 /* listvector.hpp */, @@ -591,8 +564,6 @@ 37D928300F21331F001D4494 /* sharedrabundvector.cpp */, 37D928330F21331F001D4494 /* sharedsabundvector.h */, 37D928320F21331F001D4494 /* sharedsabundvector.cpp */, - 37D928450F21331F001D4494 /* sparsematrix.hpp */, - 37D928440F21331F001D4494 /* sparsematrix.cpp */, 37AD4DB90F28E2FE00AA2D49 /* tree.h */, 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */, 379293C10F2DE73400B9034A /* treemap.h */, @@ -756,19 +727,14 @@ A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */, A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */, A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */, - 3782163D0F616079008E1F6D /* fullmatrix.cpp in Sources */, - 374CD63F0F65832000D90B4A /* libshuffcommand.cpp in Sources */, - 374CD6F10F65A4C100D90B4A /* coverage.cpp in Sources */, - 3765B47A0F77D15900C3EDC5 /* nocommands.cpp in Sources */, - 3765B4E20F78055000C3EDC5 /* sharedochiai.cpp in Sources */, - 3765B5160F780A7F00C3EDC5 /* sharedanderberg.cpp in Sources */, - 217595330F791EEE001CC3C6 /* sharedkulczynski.cpp in Sources */, - 2175953F0F792111001CC3C6 /* sharedkulczynskicody.cpp in Sources */, - 217595590F792490001CC3C6 /* sharedlennon.cpp in Sources */, - 217595640F7927BB001CC3C6 /* sharedmorisitahorn.cpp in Sources */, - 217595710F792A33001CC3C6 /* sharedbraycurtis.cpp in Sources */, - 3765B5380F7A5A9E00C3EDC5 /* heatmapcommand.cpp in Sources */, - 3765B5460F7A62A000C3EDC5 /* heatmap.cpp in Sources */, + EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */, + EB9303F90F53517300E8EF26 /* geom.cpp in Sources */, + EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */, + EB1216880F619B83004A865F /* bergerparker.cpp in Sources */, + EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */, + EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */, + EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */, + EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -782,7 +748,7 @@ GCC_DYNAMIC_NO_PIC = NO; GCC_ENABLE_FIX_AND_CONTINUE = YES; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = 0; GCC_PREPROCESSOR_DEFINITIONS = ( "_GLIBCXX_DEBUG=1", "_GLIBCXX_DEBUG_PEDANTIC=1", @@ -798,7 +764,6 @@ buildSettings = { DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; INSTALL_PATH = /usr/local/bin; PRODUCT_NAME = mothur; }; @@ -810,7 +775,6 @@ GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; - INSTALL_MODE_FLAG = "a-w,a+rX"; PREBINDING = NO; SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk"; }; @@ -826,7 +790,6 @@ GCC_OPTIMIZATION_LEVEL = 0; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; - INSTALL_MODE_FLAG = "a-w,a+rX"; PREBINDING = NO; SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk"; };