]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
added Jensen-Shannon calc. working on get.communitytype command. fixed bug in get...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index a26db6132837d72ef08bce41b1e06d971c321865..26456a3ee2c230477db7c945e2b9586dc45aea8d 100644 (file)
@@ -18,6 +18,7 @@
                A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; };
                A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; };
                A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; };
+               A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7132EB2184E792700AAA402 /* communitytype.cpp */; };
                A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
                A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
                A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */; };
@@ -29,6 +30,7 @@
                A721AB71161C572A009860A1 /* kmernode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6D161C572A009860A1 /* kmernode.cpp */; };
                A721AB72161C572A009860A1 /* kmertree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6F161C572A009860A1 /* kmertree.cpp */; };
                A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; };
+               A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7222D721856277C0055A993 /* sharedjsd.cpp */; };
                A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; };
                A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
                A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C241619E52200651424 /* abstractdecisiontree.cpp */; };
@@ -38,6 +40,7 @@
                A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
                A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; };
                A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
+               A747EC71181EA0F900345732 /* sracommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A747EC70181EA0F900345732 /* sracommand.cpp */; };
                A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
                A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
                A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; };
                A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; };
                A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */; };
                A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; };
+               A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */; };
                A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; };
                A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; };
                A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
                A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; };
+               A7B093C018579F0400843CD1 /* pam.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B093BF18579F0400843CD1 /* pam.cpp */; };
                A7BF221414587886000AD524 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; };
                A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; };
                A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
                A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
                A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */; };
                A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */; };
+               A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D395C3184FA3A200A350D7 /* kmeans.cpp */; };
                A7D755DA1535F679009BF21A /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
                A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D9378917B146B5001E90B0 /* wilcox.cpp */; };
                A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
                A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = "<group>"; };
                A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getdistscommand.h; sourceTree = "<group>"; };
                A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getdistscommand.cpp; sourceTree = "<group>"; };
+               A7132EAE184E76EB00AAA402 /* communitytype.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = communitytype.h; sourceTree = "<group>"; };
+               A7132EB2184E792700AAA402 /* communitytype.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = communitytype.cpp; sourceTree = "<group>"; };
                A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylipvector.h; sourceTree = "<group>"; };
                A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylipvector.cpp; sourceTree = "<group>"; };
                A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nmdscommand.h; sourceTree = "<group>"; };
                A721AB70161C572A009860A1 /* kmertree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kmertree.h; sourceTree = "<group>"; };
                A721AB73161C573B009860A1 /* taxonomynode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = taxonomynode.cpp; sourceTree = "<group>"; };
                A721AB74161C573B009860A1 /* taxonomynode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = taxonomynode.h; sourceTree = "<group>"; };
+               A7222D711856276C0055A993 /* sharedjsd.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sharedjsd.h; sourceTree = "<group>"; };
+               A7222D721856277C0055A993 /* sharedjsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjsd.cpp; sourceTree = "<group>"; };
                A724D2B4153C8600000A826F /* makebiomcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makebiomcommand.h; sourceTree = "<group>"; };
                A724D2B6153C8628000A826F /* makebiomcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makebiomcommand.cpp; sourceTree = "<group>"; };
                A727864212E9E28C00F86ABA /* removerarecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removerarecommand.h; sourceTree = "<group>"; };
                A741744B175CD9B1007DF49B /* makelefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makelefsecommand.h; sourceTree = "<group>"; };
                A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencecountparser.cpp; sourceTree = "<group>"; };
                A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencecountparser.h; sourceTree = "<group>"; };
+               A747EC6F181EA0E500345732 /* sracommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sracommand.h; sourceTree = "<group>"; };
+               A747EC70181EA0F900345732 /* sracommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sracommand.cpp; sourceTree = "<group>"; };
                A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kruskalwalliscommand.cpp; sourceTree = "<group>"; };
                A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = kruskalwalliscommand.h; sourceTree = "<group>"; };
                A74A9A9D148E881E00AB5E3E /* spline.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = spline.h; sourceTree = "<group>"; };
                A7A0671C156294810095C8C5 /* listotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listotulabelscommand.h; sourceTree = "<group>"; };
                A7A0671D1562AC230095C8C5 /* makecontigscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makecontigscommand.h; sourceTree = "<group>"; };
                A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makecontigscommand.cpp; sourceTree = "<group>"; };
+               A7A09B0E18773BF700FAA081 /* shannonrange.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = shannonrange.h; sourceTree = "<group>"; };
+               A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannonrange.cpp; sourceTree = "<group>"; };
                A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sortseqscommand.cpp; sourceTree = "<group>"; };
                A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sortseqscommand.h; sourceTree = "<group>"; };
                A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuassociationcommand.cpp; sourceTree = "<group>"; };
                A7AACFBA132FE008003D6C4D /* currentfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = currentfile.h; sourceTree = "<group>"; };
                A7B0231416B8244B006BA09E /* removedistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removedistscommand.cpp; sourceTree = "<group>"; };
                A7B0231716B8245D006BA09E /* removedistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removedistscommand.h; sourceTree = "<group>"; };
+               A7B093BE18579EF600843CD1 /* pam.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = pam.h; sourceTree = "<group>"; };
+               A7B093BF18579F0400843CD1 /* pam.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pam.cpp; sourceTree = "<group>"; };
                A7BF221214587886000AD524 /* myPerseus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = myPerseus.cpp; sourceTree = "<group>"; };
                A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = myPerseus.h; sourceTree = "<group>"; };
                A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraperseuscommand.h; sourceTree = "<group>"; };
                A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffmultiplecommand.cpp; sourceTree = "<group>"; };
                A7CFA42F1755400500D9ED4D /* renameseqscommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = renameseqscommand.h; sourceTree = "<group>"; };
                A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = renameseqscommand.cpp; sourceTree = "<group>"; };
+               A7D395C2184FA39300A350D7 /* kmeans.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = kmeans.h; sourceTree = "<group>"; };
+               A7D395C3184FA3A200A350D7 /* kmeans.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmeans.cpp; sourceTree = "<group>"; };
                A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treereader.h; sourceTree = "<group>"; };
                A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treereader.cpp; sourceTree = "<group>"; };
                A7D9378917B146B5001E90B0 /* wilcox.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = wilcox.cpp; sourceTree = "<group>"; };
                                A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */,
                                A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */,
                                A7DAAFA3133A254E003956EB /* commandparameter.h */,
+                               A7D395C1184FA34300A350D7 /* communitytype */,
                                A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */,
                                A7E9BA4212D3960D00DA6239 /* containers */,
                                A7E9B6B612D37EC400DA6239 /* consensus.h */,
                                A7E9B77C12D37EC400DA6239 /* overlap.hpp */,
                                A7E9B79B12D37EC400DA6239 /* progress.cpp */,
                                A7E9B79C12D37EC400DA6239 /* progress.hpp */,
-                               A7548FAF171440ED00B1F05A /* qFinderDMM.h */,
-                               A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */,
                                A77B7187173D4041002163C2 /* randomnumber.h */,
                                A77B7186173D4041002163C2 /* randomnumber.cpp */,
                                A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */,
                        name = fortran;
                        sourceTree = "<group>";
                };
+               A7D395C1184FA34300A350D7 /* communitytype */ = {
+                       isa = PBXGroup;
+                       children = (
+                               A7132EAE184E76EB00AAA402 /* communitytype.h */,
+                               A7132EB2184E792700AAA402 /* communitytype.cpp */,
+                               A7D395C2184FA39300A350D7 /* kmeans.h */,
+                               A7D395C3184FA3A200A350D7 /* kmeans.cpp */,
+                               A7B093BE18579EF600843CD1 /* pam.h */,
+                               A7B093BF18579F0400843CD1 /* pam.cpp */,
+                               A7548FAF171440ED00B1F05A /* qFinderDMM.h */,
+                               A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */,
+                       );
+                       name = communitytype;
+                       sourceTree = "<group>";
+               };
                A7E9BA3812D3956100DA6239 /* commands */ = {
                        isa = PBXGroup;
                        children = (
                                A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
                                A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
                                A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */,
+                               A747EC6F181EA0E500345732 /* sracommand.h */,
+                               A747EC70181EA0F900345732 /* sracommand.cpp */,
                                A7E9B85012D37EC400DA6239 /* subsamplecommand.h */,
                                A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
                                A7E9B85812D37EC400DA6239 /* summarycommand.h */,
                                A7E9B7E612D37EC400DA6239 /* shannon.h */,
                                A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */,
                                A7E9B7E812D37EC400DA6239 /* shannoneven.h */,
+                               A7A09B0E18773BF700FAA081 /* shannonrange.h */,
+                               A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */,
                                A7E9B7E912D37EC400DA6239 /* sharedace.cpp */,
                                A7E9B7EA12D37EC400DA6239 /* sharedace.h */,
                                A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */,
                                A7E9B7F912D37EC400DA6239 /* sharedjclass.h */,
                                A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */,
                                A7E9B7FB12D37EC400DA6239 /* sharedjest.h */,
+                               A7222D711856276C0055A993 /* sharedjsd.h */,
+                               A7222D721856277C0055A993 /* sharedjsd.cpp */,
                                A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */,
                                A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */,
                                A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */,
                                A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */,
                                A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */,
                                A7F24FC317EA36600021DC9A /* classifyrfsharedcommand.cpp in Sources */,
+                               A747EC71181EA0F900345732 /* sracommand.cpp in Sources */,
+                               A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */,
+                               A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */,
+                               A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */,
+                               A7B093C018579F0400843CD1 /* pam.cpp in Sources */,
+                               A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };
                                GCC_ENABLE_SSE3_EXTENSIONS = NO;
                                GCC_ENABLE_SSE41_EXTENSIONS = NO;
                                GCC_ENABLE_SSE42_EXTENSIONS = NO;
-                               GCC_OPTIMIZATION_LEVEL = s;
+                               GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_PREPROCESSOR_DEFINITIONS = (
                                        "MOTHUR_FILES=\"\\\"../../release\\\"\"",
-                                       "VERSION=\"\\\"1.31.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"5/24/2013\\\"\"",
+                                       "VERSION=\"\\\"1.32.0\\\"\"",
+                                       "RELEASE_DATE=\"\\\"10/31/2013\\\"\"",
                                );
                                GCC_VERSION = "";
                                "GCC_VERSION[arch=*]" = "";
                                GCC_C_LANGUAGE_STANDARD = gnu99;
                                GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
                                GCC_MODEL_TUNING = "";
-                               GCC_OPTIMIZATION_LEVEL = s;
+                               GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_PREPROCESSOR_DEFINITIONS = (
-                                       "VERSION=\"\\\"1.32.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"10/01/2013\\\"\"",
+                                       "VERSION=\"\\\"1.32.1\\\"\"",
+                                       "RELEASE_DATE=\"\\\"10/16/2013\\\"\"",
                                );
                                GCC_VERSION = "";
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;