added oligos class. added check orient parameter to trim.flows, sffinfo, fastq.info...

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 0448c02cbbc5d21fc8c353c1cdb60bb9c7ad08c8..57b6624d0e7ecf0f95f4a74d74fb58b93577435b 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -10,6 +10,7 @@
                219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; };
                219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; };
                483C952E188F0CAD0035E7B7 /* sharedrjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 483C952D188F0CAD0035E7B7 /* sharedrjsd.cpp */; };
+               4893DE2918EEF28100C615DF /* oligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4893DE2818EEF28100C615DF /* oligos.cpp */; };
                48A85BAD18E1AF2000199B6F /* getmimarkspackagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A85BAC18E1AF2000199B6F /* getmimarkspackagecommand.cpp */; };
                48E981CF189C38FB0042BE9D /* mergesfffilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E981CE189C38FB0042BE9D /* mergesfffilecommand.cpp */; };
                7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
@@ -411,6 +412,8 @@
                219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcoremicrobiomecommand.h; sourceTree = "<group>"; };
                483C952C188F0C960035E7B7 /* sharedrjsd.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sharedrjsd.h; sourceTree = "<group>"; };
                483C952D188F0CAD0035E7B7 /* sharedrjsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrjsd.cpp; sourceTree = "<group>"; };
+               4893DE2718EEF27300C615DF /* oligos.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = oligos.h; sourceTree = "<group>"; };
+               4893DE2818EEF28100C615DF /* oligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = oligos.cpp; sourceTree = "<group>"; };
                48A85BAB18E1AF0600199B6F /* getmimarkspackagecommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = getmimarkspackagecommand.h; sourceTree = "<group>"; };
                48A85BAC18E1AF2000199B6F /* getmimarkspackagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getmimarkspackagecommand.cpp; sourceTree = "<group>"; };
                48E981CD189C38E60042BE9D /* mergesfffilecommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = mergesfffilecommand.h; sourceTree = "<group>"; };
@@ -1854,6 +1857,8 @@
                                A7E9B74012D37EC400DA6239 /* listvector.hpp */,
                                A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */,
                                A7E9B76012D37EC400DA6239 /* nameassignment.hpp */,
+                               4893DE2718EEF27300C615DF /* oligos.h */,
+                               4893DE2818EEF28100C615DF /* oligos.cpp */,
                                A7E9B77712D37EC400DA6239 /* ordervector.cpp */,
                                A7E9B77812D37EC400DA6239 /* ordervector.hpp */,
                                A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */,
@@ -2179,6 +2184,7 @@
                                A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */,
                                A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */,
                                A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */,
+                               4893DE2918EEF28100C615DF /* oligos.cpp in Sources */,
                                A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */,
                                A7E9B8E012D37EC400DA6239 /* hcluster.cpp in Sources */,
                                A7E9B8E112D37EC400DA6239 /* hclustercommand.cpp in Sources */,