venncommand.h

   1 #ifndef VENNCOMMAND_H
   2 #define VENNCOMMAND_H
   3 /*
   4  *  venncommand.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 3/30/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "inputdata.h"
  14 #include "readmatrix.hpp"
  15 #include "sharedlistvector.h"
  16 #include "venn.h"
  17 #include "validcalculator.h"
  18
  19
  20 class GlobalData;
  21
  22
  23 class VennCommand : public Command {
  24
  25 public:
  26         VennCommand();
  27         ~VennCommand();
  28         int execute();
  29
  30 private:
  31         GlobalData* globaldata;
  32         ReadMatrix* read;
  33         InputData* input;
  34         SharedListVector* SharedList;
  35         SharedOrderVector* order;
  36         OrderVector* ordersingle;
  37         Venn* venn;
  38         string format;
  39         vector<Calculator*> vennCalculators;
  40         ValidCalculators* validCalculator;
  41         int abund;
  42
  43         void setGroups();
  44
  45 };
  46
  47
  48
  49 #endif