venncommand.h

   1 #ifndef VENNCOMMAND_H
   2 #define VENNCOMMAND_H
   3 /*
   4  *  venncommand.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 3/30/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "inputdata.h"
  14 #include "readmatrix.hpp"
  15 #include "sharedlistvector.h"
  16 #include "venn.h"
  17
  18
  19 class GlobalData;
  20
  21
  22 class VennCommand : public Command {
  23
  24 public:
  25         VennCommand();
  26         ~VennCommand();
  27         int execute();
  28
  29 private:
  30         GlobalData* globaldata;
  31         ReadMatrix* read;
  32         InputData* input;
  33         SharedListVector* SharedList;
  34         SharedOrderVector* order;
  35         OrderVector* ordersingle;
  36         Venn* venn;
  37         string format;
  38
  39         void setGroups();
  40
  41 };
  42
  43
  44
  45 #endif