venncommand.h

   1 #ifndef VENNCOMMAND_H
   2 #define VENNCOMMAND_H
   3 /*
   4  *  venncommand.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 3/30/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "inputdata.h"
  14 #include "readotu.h"
  15 #include "sharedlistvector.h"
  16 #include "venn.h"
  17 #include "validcalculator.h"
  18 #include "sharedutilities.h"
  19
  20
  21 class GlobalData;
  22
  23
  24 class VennCommand : public Command {
  25
  26 public:
  27         VennCommand();
  28         ~VennCommand();
  29         int execute();
  30
  31 private:
  32         GlobalData* globaldata;
  33         ReadOTUFile* read;
  34         SharedUtil* util;
  35         InputData* input;
  36         SharedListVector* SharedList;
  37         SharedOrderVector* order;
  38         OrderVector* ordersingle;
  39         Venn* venn;
  40         string format;
  41         vector<Calculator*> vennCalculators;
  42         ValidCalculators* validCalculator;
  43         int abund;
  44
  45 };
  46
  47
  48
  49 #endif