validparameter.h

   1 #ifndef VALIDPARAMETERS_H
   2 #define VALIDPARAMETERS_H
   3
   4 /*
   5  *  validparameter.h
   6  *  Dotur
   7  *
   8  *  Created by Sarah Westcott on 1/5/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12 using namespace std;
  13
  14 #include "mothur.h"
  15
  16 //This class contains a list of all valid parameters in Mothur.
  17 //It has a function which will tell you if your parameter is valid.
  18 //When adding a new parameter you must add it to the valid list in the class constructor.
  19
  20
  21 class ValidParameters {
  22
  23         public:
  24                 ValidParameters();
  25                 ~ValidParameters();
  26                 bool isValidParameter(string, string);
  27
  28         private:
  29                 map<string, string> readdist;
  30                 map<string, string> readotu;
  31                 map<string, string> readtree;
  32                 map<string, string> cluster;
  33                 map<string, string> deconvolute;
  34                 map<string, string> parsimony;
  35                 map<string, string> collectsingle;
  36                 map<string, string> collectshared;
  37                 map<string, string> rarefactsingle;
  38                 map<string, string> rarefactshared;
  39                 map<string, string> summarysingle;
  40                 map<string, string> summaryshared;
  41                 map<string, string> unifracweighted;
  42                 map<string, string> unifracunweighted;
  43                 map<string, string> libshuff;
  44
  45                 map<string, string>::iterator it;
  46
  47                 void initialReaddist();
  48                 void initialReadotu();
  49                 void initialReadtree();
  50                 void initialCluster();
  51                 void initialDeconvolute();
  52                 void initialParsimony();
  53                 void initialCollectsingle();
  54                 void initialCollectshared();
  55                 void initialRarefactsingle();
  56                 void initialRarefactshared();
  57                 void initialSummarysingle();
  58                 void initialSummaryshared();
  59                 void initialUnifracweighted();
  60                 void initialUnifracunweighted();
  61                 void initialLibshuff();
  62
  63 };
  64
  65 #endif