validparameter.cpp

   1 /*
   2  *  validparameter.cpp
   3  *  Dotur
   4  *
   5  *  Created by Sarah Westcott on 1/5/09.
   6  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   7  *
   8  */
   9
  10 #include "validparameter.h"
  11
  12 /***********************************************************************/
  13
  14 ValidParameters::ValidParameters() {
  15         try {
  16
  17                 parameters["phylipfile"]                = "phylipfile";
  18                 parameters["columnfile"]                = "columnfile";
  19                 parameters["listfile"]                  = "listfile";
  20                 parameters["rabundfile"]                = "rabundfile";
  21                 parameters["sabundfile"]                = "sabundfile";
  22                 parameters["namefile"]                  = "namefile";
  23                 parameters["groupfile"]                 = "groupfile";
  24                 parameters["orderfile"]                 = "orderfile";
  25                 parameters["fastafile"]                 = "fastafile";
  26                 parameters["treefile"]                  = "treefile";
  27                 parameters["fileroot"]                  = "fileroot";
  28                 parameters["cutoff"]                    = "cutoff";
  29                 parameters["method"]                    = "method";
  30                 parameters["format"]                    = "format";
  31                 parameters["precision"]                 = "precision";
  32                 parameters["label"]                             = "label";
  33                 parameters["line"]                              = "line";
  34                 parameters["iters"]                             = "iters";
  35                 parameters["jumble"]                    = "jumble";
  36                 parameters["freq"]                              = "freq";
  37                 parameters["single"]                    = "single";
  38                 parameters["rarefaction"]               = "rarefaction";
  39                 parameters["sharedrarefaction"] = "sharedrarefaction";
  40                 parameters["shared"]                    = "shared";
  41                 parameters["summary"]                   = "summary";
  42                 parameters["sharedsummary"]             = "sharedsummary";
  43
  44         }
  45         catch(exception& e) {
  46                 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  47                 exit(1);
  48         }
  49         catch(...) {
  50                 cout << "An unknown error has occurred in the ValidParameters class function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  51                 exit(1);
  52         }
  53 }
  54
  55 /***********************************************************************/
  56
  57 ValidParameters::~ValidParameters() {}
  58
  59 /***********************************************************************/
  60 bool ValidParameters::isValidParameter(string parameter) {
  61         try {
  62
  63                 //is the parameter in the map
  64                 if ((parameters.find(parameter)) != (parameters.end())) {
  65                         return true;
  66                 }else{
  67                         cout << parameter << " is not a valid parameter in Mothur." << endl;
  68                         return false;
  69                 }
  70
  71         }
  72         catch(exception& e) {
  73                 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  74                 exit(1);
  75         }
  76         catch(...) {
  77                 cout << "An unknown error has occurred in the ValidParameters class function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  78                 exit(1);
  79         }
  80 }
  81
  82 /***********************************************************************/