uchime_src/evalue.h

   1 #ifndef evalue_h\r
   2 #define evalue_h\r
   3 \r
   4 #include <float.h>\r
   5 \r
   6 void SetKarlin(double GappedLambda, double UngappedLambda,\r
   7   double GappedK, double UngappedK, double DBLength);\\r
   8 \r
   9 double GetKarlinDBLength();\r
  10 void SetKarlinDBLength(double DBLength);\r
  11 void LogKarlin();\r
  12 void SetKarlinAmino(double DBLength);\r
  13 void SetKarlinNucleo(double DBLength);\r
  14 void SetKarlin(double DBLength, bool Nucleo);\r
  15 double ComputeBitScoreGapped(double Score);\r
  16 double ComputeBitScoreUngapped(double Score);\r
  17 double ComputeEvalueGapped(double Score, unsigned QueryLength);\r
  18 double ComputeEvalueUngapped(double Score, unsigned QueryLength);\r
  19 double ComputeMinScoreGivenEvalueAGapped(double Evalue, unsigned Area);\r
  20 double ComputeMinScoreGivenEvalueAUngapped(double Evalue, unsigned Area);\r
  21 double ComputeMinScoreGivenEvalueQGapped(double Evalue, unsigned QueryLength);\r
  22 double ComputeMinScoreGivenEvalueQUngapped(double Evalue, unsigned QueryLength);\r
  23 double ComputeEvalueGappedFromBitScore(double BitScore, unsigned QueryLength);\r
  24 \r
  25 #endif // evalue_h\r