systemcommand.h

   1 #ifndef SYSTEMCOMMAND_H
   2 #define SYSTEMCOMMAND_H
   3
   4 /*
   5  *  systemcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 7/8/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14
  15
  16 class SystemCommand : public Command {
  17
  18         public:
  19
  20                 SystemCommand(string);
  21                 SystemCommand() { abort = true; calledHelp = true; }
  22                 ~SystemCommand(){}
  23                 vector<string> getRequiredParameters();
  24                 vector<string> getValidParameters();
  25                 vector<string> getRequiredFiles();
  26                 map<string, vector<string> > getOutputFiles() { return outputTypes; }
  27                 int execute();
  28                 void help();
  29
  30         private:
  31                 string command;
  32                 bool abort;
  33                 vector<string> outputNames;
  34                 map<string, vector<string> > outputTypes;
  35
  36 };
  37
  38 #endif
  39