1 #ifndef SUMMARYSHAREDCOMMAND_H
2 #define SUMMARYSHAREDCOMMAND_H
4 * summarysharedcommand.h
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
13 #include "command.hpp"
14 #include "sharedrabundvector.h"
15 #include "inputdata.h"
16 #include "calculator.h"
18 #include "validcalculator.h"
22 class SummarySharedCommand : public Command {
25 SummarySharedCommand(string);
26 ~SummarySharedCommand();
31 GlobalData* globaldata;
33 vector<Calculator*> sumCalculators;
35 ValidCalculators* validCalculator;
36 SharedListVector* SharedList;
38 map<string, string> parameters;
39 map<string, string>::iterator it;
40 bool abort, allLines, mult;
41 set<string> labels; //holds labels to be used
42 string label, calc, groups;
43 vector<string> Estimators, Groups;
44 vector<SharedRAbundVector*> lookup;
45 string outputFileName, format, outAllFileName;
46 ofstream outputFileHandle, outAll;
47 void process(vector<SharedRAbundVector*>);