7 * Created by westcott on 5/19/10.
8 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "mothurout.h"
16 /******************************************************/
22 SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method
25 vector< map<string, string> > getDistanceFiles(); //returns map of distance files -> namefile sorted by distance file size
26 string getSingletonNames() { return singleton; } //returns namesfile containing singletons
31 string distFile, namefile, singleton, method, taxFile;
32 vector< map< string, string> > dists;
38 int splitDistanceLarge();
39 int splitDistanceRAM();
40 int splitNames(vector<set<string> >& groups);
43 /******************************************************/