sharedutilities.h

   1 #ifndef SHAREDUTIL_H
   2 #define SHAREDUTIL_H
   3 /*
   4  *  sharedutilities.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 4/9/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "mothur.h"
  13
  14 class SharedRAbundVector;
  15 class SharedOrderVector;
  16
  17 /**************************************************************************************************/
  18
  19 class SharedUtil {
  20         public:
  21                 SharedUtil() {};
  22                 ~SharedUtil() {};
  23
  24                 void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
  25                 void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
  26                 void setGroups(vector<string>&, vector<string>&);  //globaldata->Groups, your tree or group map
  27                 void setGroups(vector<string>&, vector<string>&, string);  //globaldata->Groups, your tree or group map, mode
  28                 void setGroups(vector<string>&, vector<string>&, string&, int&, string);  //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
  29                 void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
  30                 void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
  31
  32         private:
  33
  34                 bool isValidGroup(string, vector<string>);
  35 };
  36
  37 /**************************************************************************************************/
  38
  39
  40
  41 #endif