sharedutilities.h

   1 #ifndef SHAREDUTIL_H
   2 #define SHAREDUTIL_H
   3 /*
   4  *  sharedutilities.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 4/9/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "mothur.h"
  13 #include "mothurout.h"
  14
  15 class SharedRAbundVector;
  16 class SharedOrderVector;
  17
  18 /**************************************************************************************************/
  19
  20 class SharedUtil {
  21         public:
  22                 SharedUtil() { m = MothurOut::getInstance(); }
  23                 ~SharedUtil() {};
  24
  25                 void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
  26                 void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
  27                 void setGroups(vector<string>&, vector<string>&);  //globaldata->Groups, your tree or group map
  28                 void setGroups(vector<string>&, vector<string>&, string);  //globaldata->Groups, your tree or group map, mode
  29                 void setGroups(vector<string>&, vector<string>&, string&, int&, string);  //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
  30                 void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
  31                 void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
  32                 bool isValidGroup(string, vector<string>);
  33
  34         private:
  35                 MothurOut* m;
  36
  37 };
  38
  39 /**************************************************************************************************/
  40
  41 #endif