shared.h

   1 #ifndef SHARED_H
   2 #define SHARED_H
   3
   4 /*
   5  *  shared.h
   6  *  Dotur
   7  *
   8  *  Created by Sarah Westcott on 12/5/08.
   9  *  Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 using namespace std;
  14
  15 #include "sharedrabundvector.h"
  16 #include "sharedlistvector.h"
  17 #include "globaldata.hpp"
  18
  19 class Shared {
  20         public:
  21                 Shared();
  22                 ~Shared();
  23                 void getSharedVectors(int, SharedListVector*);
  24                 map<string, SharedRAbundVector*> sharedGroups; //string is groupname, SharedVector* is out info for that group
  25
  26         private:
  27                 GlobalData* globaldata;
  28                 void parse(int, SharedListVector*);
  29                 vector< map<string, SharedRAbundVector*> > sharedRAbund;  //contains all the info needed to create the .shared file not sure if we will need
  30 };
  31
  32 #endif