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removed read.dist, read.otu, read.tree and globaldata. added current to defaults...
[mothur.git] / setdircommand.h
1 #ifndef SETDIRCOMMAND_H
2 #define SETDIRCOMMAND_H
3
4 /*
5  *  setoutdircommand.h
6  *  Mothur
7  *
8  *  Created by westcott on 1/21/10.
9  *  Copyright 2010 Schloss Lab. All rights reserved.
10  *
11  */
12
13 #include "command.hpp"
14 #include "commandfactory.hpp"
15
16 /**********************************************************/
17
18 class SetDirectoryCommand : public Command {
19         
20 public:
21         SetDirectoryCommand(string);
22         SetDirectoryCommand() { abort = true; calledHelp = true; setParameters(); }
23         ~SetDirectoryCommand(){}
24         
25         vector<string> setParameters();
26         string getCommandName()                 { return "set.dir";             }
27         string getCommandCategory()             { return "General";             }
28         string getHelpString(); 
29         
30         int execute(); 
31         void help() { m->mothurOut(getHelpString()); }  
32         
33 private:
34         CommandFactory* commandFactory;
35         string output, input, tempdefault;
36         bool abort;
37         vector<string> outputNames;
38         
39                 
40 };
41
42 /**********************************************************/
43  
44 #endif
45