screenseqscommand.h

   1 #ifndef SCREENSEQSCOMMAND_H
   2 #define SCREENSEQSCOMMAND_H
   3
   4 /*
   5  *  screenseqscommand.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 6/3/09.
   9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12 #include "mothur.h"
  13 #include "command.hpp"
  14 #include "globaldata.hpp"
  15 #include "readfasta.h"
  16 #include "readnexus.h"
  17 #include "readclustal.h"
  18 #include "readseqsphylip.h"
  19
  20 using namespace std;
  21
  22 class ScreenSeqsCommand : public Command {
  23
  24 public:
  25         ScreenSeqsCommand();
  26         ~ScreenSeqsCommand();
  27         int execute();
  28 private:
  29         void screenNameGroupFile(set<string>);
  30         void screenGroupFile(set<string>);
  31
  32         GlobalData* globaldata;
  33 };
  34
  35 #endif