1 #ifndef SCREENSEQSCOMMAND_H
2 #define SCREENSEQSCOMMAND_H
8 * Created by Pat Schloss on 6/3/09.
9 * Copyright 2009 Patrick D. Schloss. All rights reserved.
13 #include "command.hpp"
14 #include "globaldata.hpp"
16 class ScreenSeqsCommand : public Command {
19 ScreenSeqsCommand(string);
25 void screenNameGroupFile(set<string>);
26 void screenGroupFile(set<string>);
28 GlobalData* globaldata;
30 map<string, string> parameters;
31 map<string, string>::iterator it;
33 string fastafile, namefile, groupfile;
34 int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength;