screenseqscommand.h

   1 #ifndef SCREENSEQSCOMMAND_H
   2 #define SCREENSEQSCOMMAND_H
   3
   4 /*
   5  *  screenseqscommand.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 6/3/09.
   9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12 #include "mothur.h"
  13 #include "command.hpp"
  14 #include "globaldata.hpp"
  15 #include "readfasta.h"
  16 #include "readnexus.h"
  17 #include "readclustal.h"
  18 #include "readseqsphylip.h"
  19 #include <set>
  20
  21 using namespace std;
  22
  23 class ScreenSeqsCommand : public Command {
  24
  25 public:
  26         ScreenSeqsCommand();
  27         ~ScreenSeqsCommand();
  28         int execute();
  29 private:
  30         void screenNameGroupFile(set<string>);
  31         int numSeqs;
  32         GlobalData* globaldata;
  33         ReadSeqs* readSeqs;
  34         SequenceDB* db;
  35 };
  36
  37 #endif