reportfile.h

   1 #ifndef REPORTFILE
   2 #define REPORTFILE
   3
   4 /*
   5  *  reportfile.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 7/12/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "mothur.h"
  15 #include "mothurout.h"
  16
  17 /**************************************************************************************************/
  18
  19 class ReportFile {
  20 public:
  21         ReportFile();
  22         ReportFile(ifstream&);
  23         ReportFile(ifstream&, string);
  24
  25         string getQueryName()                           {       return queryName;                               }
  26         string getTemplateName()                        {       return templateName;                    }
  27         string getSearchMethod()                        {       return searchMethod;                    }
  28         string getAlignmentMethod()                     {       return alignmentMethod;                 }
  29
  30         int getQueryLength()                            {       return queryLength;                             }
  31         int getTemplateLength()                         {       return templateLength;                  }
  32         int getQueryStart()                                     {       return queryStart;                              }
  33         int getQueryEnd()                                       {       return queryEnd;                                }
  34         int getTemplateStart()                          {       return templateStart;                   }
  35         int getTemplateEnd()                            {       return templateEnd;                             }
  36         int getPairwiseAlignmentLength()        {       return pairwiseAlignmentLength; }
  37         int getGapsInQuery()                            {       return gapsInQuery;                             }
  38         int getGapsInTemplate()                         {       return gapsInTemplate;                  }
  39         int getLongestInsert()                          {       return longestInsert;                   }
  40
  41         float getSearchScore()                          {       return searchScore;                             }
  42         float getSimBtwnQueryAndTemplate()      {       return simBtwnQueryAndTemplate; }
  43
  44
  45 private:
  46
  47         MothurOut* m;
  48
  49         string queryName, templateName, searchMethod, alignmentMethod;
  50         int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
  51         float searchScore, simBtwnQueryAndTemplate;
  52
  53 };
  54
  55 /**************************************************************************************************/
  56
  57 #endif