reportfile.cpp

   1 /*
   2  *  reportfile.cpp
   3  *  Mothur
   4  *
   5  *  Created by Pat Schloss on 12/19/10.
   6  *  Copyright 2010 Schloss Lab. All rights reserved.
   7  *
   8  */
   9
  10 #include "reportfile.h"
  11
  12 /**************************************************************************************************/
  13
  14 ReportFile::ReportFile(){
  15         try {
  16                 m = MothurOut::getInstance();
  17         }
  18         catch(exception& e) {
  19                 m->errorOut(e, "ReportFile", "ReportFile");
  20                 exit(1);
  21         }
  22 }
  23
  24 /**************************************************************************************************/
  25
  26 ReportFile::ReportFile(ifstream& repFile, string repFileName){
  27         try {
  28                 m = MothurOut::getInstance();
  29
  30                 m->openInputFile(repFileName, repFile);
  31                 m->getline(repFile);
  32         }
  33         catch(exception& e) {
  34                 m->errorOut(e, "ReportFile", "ReportFile");
  35                 exit(1);
  36         }
  37 }
  38
  39
  40 /**************************************************************************************************/
  41
  42 ReportFile::ReportFile(ifstream& repFile){
  43         try {
  44
  45                 m = MothurOut::getInstance();
  46
  47                 repFile >> queryName;
  48                 repFile >> queryLength;
  49                 repFile >> templateName;
  50                 repFile >> templateLength;
  51                 repFile >> searchMethod;
  52                 repFile >> searchScore;
  53                 repFile >> alignmentMethod;
  54                 repFile >> queryStart;
  55                 repFile >> queryEnd;
  56                 repFile >> templateStart;
  57                 repFile >> templateEnd;
  58                 repFile >> pairwiseAlignmentLength;
  59                 repFile >> gapsInQuery;
  60                 repFile >> gapsInTemplate;
  61                 repFile >> longestInsert;
  62                 repFile >> simBtwnQueryAndTemplate;
  63
  64                 m->gobble(repFile);
  65         }
  66         catch(exception& e) {
  67                 m->errorOut(e, "ReportFile", "ReportFile");
  68                 exit(1);
  69         }
  70
  71 }
  72
  73 /**************************************************************************************************/