referencedb.h

   1 #ifndef MYREFERENCEDB_H
   2 #define MYREFERENCEDB_H
   3
   4 /*
   5  *  referencedb.h
   6  *  Mothur
   7  *
   8  *  Created by westcott on 6/29/11.
   9  *  Copyright 2011 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "mothur.h"
  15 #include "sequence.hpp"
  16
  17 /***********************************************/
  18
  19 class ReferenceDB {
  20
  21         public:
  22
  23                 static ReferenceDB* getInstance();
  24                 void clearMemory();
  25
  26                 bool save;
  27                 vector<Sequence> referenceSeqs;
  28                 vector< vector<float> > wordGenusProb;
  29                 vector<diffPair> WordPairDiffArr;
  30
  31                 string getSavedReference()                      { return referencefile;         }
  32                 void setSavedReference(string p)        { referencefile = p;            }
  33                 string getSavedTaxonomy()                       { return taxonomyfile;          }
  34                 void setSavedTaxonomy(string p)         { taxonomyfile = p;                     }
  35
  36         private:
  37
  38                 static ReferenceDB* myInstance;
  39                 ReferenceDB() { referencefile = ""; taxonomyfile = ""; save = false; }
  40                 ReferenceDB(const ReferenceDB&){}// Disable copy constructor
  41                 void operator=(const ReferenceDB&){} // Disable assignment operator
  42                 ~ReferenceDB(){ myInstance = 0; }
  43
  44                 string referencefile, taxonomyfile;
  45 };
  46 /***********************************************/
  47
  48 #endif
  49