readtreecommand.h

   1 #ifndef READTREECOMMAND_H
   2 #define READTREECOMMAND_H
   3
   4 /*
   5  *  readtreecommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 1/23/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14 #include "readtree.h"
  15 #include "treemap.h"
  16
  17 class GlobalData;
  18
  19 class ReadTreeCommand : public Command {
  20 public:
  21         ReadTreeCommand(string);
  22         ~ReadTreeCommand();
  23         int execute();
  24         void help();
  25
  26 private:
  27         GlobalData* globaldata;
  28         ReadTree* read;
  29         TreeMap* treeMap;
  30         string filename, treefile, groupfile, namefile;
  31         bool abort;
  32         map<string, string> nameMap;
  33
  34         int readNamesFile();
  35         int numUniquesInName;
  36
  37 };
  38
  39
  40 #endif