readsharedcommand.h

   1 #ifndef READSHAREDCOMMAND_H
   2 #define READSHAREDCOMMAND_H
   3 /*
   4  *  readsharedcommand.h
   5  *  Mothur
   6  *
   7  *  Created by Sarah Westcott on 2/12/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "readmatrix.hpp"
  14 #include "inputdata.h"
  15
  16 /* The read.shared must be run before you execute a collect.shared, rarefaction.shared or summary.shared command.
  17 The read.shared command is used to read a shared file. The read.shared should be entered in the following format:
  18 read.shared(shared=yourSharedFile). The shared parameter is required.  */
  19
  20 class GlobalData;
  21
  22 class ReadSharedCommand : public Command {
  23 public:
  24         ReadSharedCommand();
  25         ~ReadSharedCommand();
  26         int execute();
  27
  28 private:
  29         GlobalData* globaldata;
  30         ReadMatrix* read;
  31         InputData* input;
  32         string filename;
  33 };
  34
  35 #endif
  36
  37
  38
  39