readnexusal.h

   1 #ifndef READNEXUSALN_H
   2 #define READNEXUSALN_H
   3
   4 /*
   5  *  readnexusaln.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 4/22/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "globaldata.hpp"
  14 #include "sequencedb.h"
  15 //#include "utilities.hpp"
  16
  17 /**********************************************************************************/
  18
  19 class ReadNexus {
  20
  21         public:
  22                 ReadNexus(string);
  23                 ~ReadNexus();
  24                 void read();
  25
  26         private:
  27                 GlobalData* globaldata;
  28                 string nexusFile;
  29                 ifstream filehandle;
  30                 SequenceDB sequencedb;
  31                 int readOk; // readOk = 0 means success, readOk = 1 means error(s).
  32
  33
  34 };
  35
  36 #endif