readfasta.h

   1 #ifndef READFASTA_H
   2 #define READFASTA_H
   3
   4 /*
   5  *  readfasta.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 4/21/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "readseqs.h"
  14 #include "globaldata.hpp"
  15 #include "sequencedb.h"
  16 #include "mothur.h"
  17
  18 /**********************************************************************************/
  19
  20 class ReadFasta : public ReadSeqs {
  21
  22         public:
  23                 ReadFasta(string);
  24                 ~ReadFasta();
  25                 void read();
  26                 SequenceDB* getDB();
  27         private:
  28                 string readName(ifstream&);
  29                 string readSequence(ifstream&);
  30
  31 };
  32
  33 #endif