1 #ifndef READDISTPHYLIPFILECOMMAND_H
2 #define READDISTPHYLIPFILECOMMAND_H
4 * readdistphylipfilecommand.h
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include <Carbon/Carbon.h>
16 #include "command.hpp"
17 #include "readmatrix.hpp"
19 /* The read.phylip command is used to read a distance matrix file in phylip format.
20 The read.phylip command parameter options are distfile, namefile, cutoff and precision.
21 The read.phylip command should be in the following format: read.phylip(distfile=yourDistFile,
22 namefile=yourNameFile, cutoff=yourCutoff, precision=yourPrecision). The distfile parameter is required.
23 If you do not provide a cutoff value 10.00 is assumed. If you do not provide a precision value then 100 is assumed. */
30 class ReadDistPhylipFileCommand : public Command {
32 ReadDistPhylipFileCommand();
33 ~ReadDistPhylipFileCommand();
37 GlobalData* globaldata;
41 string filename, format, method;
42 NameAssignment* nameMap;