rarefact.h

   1 #ifndef RAREFACT_H
   2 #define RAREFACT_H
   3
   4 using namespace std;
   5
   6 #include "rarefactioncurvedata.h"
   7 #include "raredisplay.h"
   8 #include "ordervector.hpp"
   9 #include "mothur.h"
  10
  11
  12 class Rarefact {
  13
  14 public:
  15         Rarefact(OrderVector* o, vector<Display*> disp) :
  16                         numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel())  {};
  17         Rarefact(SharedOrderVector* sharedorder, vector<Display*> disp) :
  18                                         numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  {};
  19
  20         ~Rarefact(){};
  21         void getCurve(int, int);
  22         void getSharedCurve(int, int);
  23
  24 private:
  25         SharedOrderVector* sharedorder;
  26         GlobalData* globaldata;
  27         OrderVector* order;
  28         vector<Display*> displays;
  29         int numSeqs, numGroupComb;
  30         string label;
  31         void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
  32         vector<SharedRAbundVector*> lookup;
  33
  34 };
  35
  36
  37 #endif
  38