rarefact.h

   1 #ifndef RAREFACT_H
   2 #define RAREFACT_H
   3
   4 #include "rarefactioncurvedata.h"
   5 #include "raredisplay.h"
   6 #include "ordervector.hpp"
   7 #include "mothur.h"
   8 #include "globaldata.hpp"
   9
  10
  11 class Rarefact {
  12
  13 public:
  14         Rarefact(OrderVector* o, vector<Display*> disp, int p) :
  15                         numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel()), processors(p)  { m = MothurOut::getInstance(); }
  16         Rarefact(vector<SharedRAbundVector*> shared, vector<Display*> disp) :
  17                                          lookup(shared), displays(disp) {  globaldata = GlobalData::getInstance(); m = MothurOut::getInstance(); }
  18
  19         ~Rarefact(){};
  20         int getCurve(float, int);
  21         int getSharedCurve(float, int);
  22
  23 private:
  24         GlobalData* globaldata;
  25         OrderVector* order;
  26         vector<Display*> displays;
  27         int numSeqs, numGroupComb, processors;
  28         string label;
  29         void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
  30         vector<SharedRAbundVector*> lookup;
  31         MothurOut* m;
  32
  33         int createProcesses(vector<int>&, RarefactionCurveData*, int);
  34         int driver(RarefactionCurveData*, int, int);
  35
  36 };
  37
  38
  39 #endif
  40