phylodiversity.h

   1 #ifndef PHYLODIVERSITY_H
   2 #define PHYLODIVERSITY_H
   3
   4
   5 /*
   6  *  phylodiversity.h
   7  *  Mothur
   8  *
   9  *  Created by westcott on 4/30/10.
  10  *  Copyright 2010 Schloss Lab. All rights reserved.
  11  *
  12  */
  13
  14 #include "treemap.h"
  15 #include "globaldata.hpp"
  16 #include "mothurout.h"
  17
  18 typedef vector<double> EstOutput;
  19
  20 /***********************************************************************/
  21
  22 class PhyloDiversity  {
  23
  24         public:
  25                 PhyloDiversity(TreeMap* t) : tmap(t) { globaldata = GlobalData::getInstance();  m = MothurOut::getInstance(); }
  26                 ~PhyloDiversity() {};
  27
  28                 EstOutput getValues(Tree*, vector<int>);
  29                 void setTotalGroupBranchLengths(Tree*);
  30
  31         private:
  32                 GlobalData* globaldata;
  33                 MothurOut* m;
  34                 EstOutput data;
  35                 TreeMap* tmap;
  36                 map<string, float> groupTotals;
  37 };
  38
  39 /***********************************************************************/
  40
  41
  42 #endif
  43