parselistscommand.h

   1 #ifndef PARSELISTCOMMAND_H
   2 #define PARSELISTCOMMAND_H
   3 /*
   4  *  parselistcommand.h
   5  *  Mothur
   6  *
   7  *  Created by westcott on 2/24/10.
   8  *  Copyright 2010 Schloss Lab. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "groupmap.h"
  14 #include "inputdata.h"
  15 #include "listvector.hpp"
  16
  17 /***************************************************************************************/
  18
  19 class ParseListCommand : public Command {
  20
  21 public:
  22         ParseListCommand(string);
  23         ~ParseListCommand();
  24         int execute();
  25         void help();
  26
  27 private:
  28         int parse(ListVector*);
  29
  30         ListVector* list;
  31         GroupMap* groupMap;
  32         InputData* input;
  33
  34         ofstream out;
  35         string outputDir, listfile, groupfile, label;
  36         set<string> labels;
  37         bool abort, allLines;
  38
  39         map<string, ofstream*> filehandles;
  40         map<string, ofstream*>::iterator it3;
  41
  42 };
  43
  44 /***************************************************************************************/
  45
  46 #endif
  47