nameassignment.cpp

   1
   2
   3 #include "nameassignment.hpp"
   4
   5 //**********************************************************************************************************************
   6
   7 NameAssignment::NameAssignment(string nameMapFile){
   8         m = MothurOut::getInstance();
   9         openInputFile(nameMapFile, fileHandle);
  10
  11 }
  12
  13 //**********************************************************************************************************************
  14
  15 void NameAssignment::readMap(){
  16         try{
  17                 string firstCol, secondCol, skip;
  18         //      int index = 0;
  19
  20
  21                 map<string, int>::iterator itData;
  22                 int rowIndex = 0;
  23
  24                 while(fileHandle){
  25                         fileHandle >> firstCol;                         //read from first column
  26                         fileHandle >> secondCol;                        //read from second column
  27
  28                         itData = (*this).find(firstCol);
  29                         if (itData == (*this).end()) {
  30
  31                                 (*this)[firstCol] = rowIndex++;
  32                                 list.push_back(secondCol);              //adds data's value to list
  33                                 reverse[rowIndex] = firstCol;
  34
  35                         }else{  m->mothurOut(firstCol + " is already in namesfile. I will use first definition."); m->mothurOutEndLine();  }
  36
  37                         gobble(fileHandle);
  38                 }
  39                 fileHandle.close();
  40
  41         }
  42         catch(exception& e) {
  43                 m->errorOut(e, "NameAssignment", "readMap");
  44                 exit(1);
  45         }
  46 }
  47 //**********************************************************************************************************************
  48 void NameAssignment::push_back(string name) {
  49         try{
  50
  51                 int num = (*this).size();
  52                 (*this)[name] = num;
  53                 reverse[num] = name;
  54
  55                 list.push_back(name);
  56         }
  57         catch(exception& e) {
  58                 m->errorOut(e, "NameAssignment", "push_back");
  59                 exit(1);
  60         }
  61 }
  62
  63 //**********************************************************************************************************************
  64
  65 ListVector NameAssignment::getListVector(void){
  66
  67         return list;
  68
  69 }
  70
  71 //**********************************************************************************************************************
  72
  73 void NameAssignment::print(ostream& out){
  74         try {
  75                 map<string,int>::iterator it;
  76 //cout << (*this).size() << endl;
  77                 for(it = (*this).begin(); it!=(*this).end(); it++){
  78                         out << it->first << '\t' <<  it->second << endl;  //prints out keys and values of the map this.
  79                 }
  80         }
  81         catch(exception& e) {
  82                 m->errorOut(e, "NameAssignment", "print");
  83                 exit(1);
  84         }
  85 }
  86
  87 //**********************************************************************************************************************
  88
  89 int NameAssignment::get(string key){
  90
  91         return  (*this)[key];
  92
  93 }
  94 //**********************************************************************************************************************
  95
  96 string NameAssignment::get(int key){
  97
  98         return  reverse[key];
  99
 100 }
 101 //**********************************************************************************************************************
 102