nameassignment.cpp

   1
   2
   3 #include "nameassignment.hpp"
   4
   5 //**********************************************************************************************************************
   6
   7 NameAssignment::NameAssignment(string nameMapFile){
   8
   9         openInputFile(nameMapFile, fileHandle);
  10
  11 }
  12
  13 //**********************************************************************************************************************
  14
  15 void NameAssignment::readMap(){
  16         try{
  17                 string firstCol, secondCol, skip;
  18         //      int index = 0;
  19
  20
  21 //              map<string, string> data;
  22                 int rowIndex = 0;
  23
  24                 while(fileHandle){
  25                         fileHandle >> firstCol;                         //read from first column
  26                         fileHandle >> secondCol;                        //read from second column
  27
  28 //                      data[firstCol] = secondCol;                     //store data in map
  29
  30                         list.push_back(secondCol);              //adds data's value to list
  31                         (*this)[firstCol] = rowIndex++;
  32                         gobble(fileHandle);
  33                 }
  34                 fileHandle.close();
  35
  36         }
  37         catch(exception& e) {
  38                 errorOut(e, "NameAssignment", "readMap");
  39                 exit(1);
  40         }
  41 }
  42 //**********************************************************************************************************************
  43 void NameAssignment::push_back(string name) {
  44         try{
  45
  46                 int num = (*this).size();
  47                 (*this)[name] = num;
  48
  49                 list.push_back(name);
  50         }
  51         catch(exception& e) {
  52                 errorOut(e, "NameAssignment", "push_back");
  53                 exit(1);
  54         }
  55 }
  56
  57 //**********************************************************************************************************************
  58
  59 ListVector NameAssignment::getListVector(void){
  60
  61         return list;
  62
  63 }
  64
  65 //**********************************************************************************************************************
  66
  67 void NameAssignment::print(void){
  68         try {
  69                 map<string,int>::iterator it;
  70                 for(it = (*this).begin(); it!=(*this).end(); it++){
  71                         mothurOut(it->first + "\t" + toString(it->second)); mothurOutEndLine();  //prints out keys and values of the map this.
  72                 }
  73         }
  74         catch(exception& e) {
  75                 errorOut(e, "NameAssignment", "print");
  76                 exit(1);
  77         }
  78 }
  79
  80 //**********************************************************************************************************************
  81
  82 int NameAssignment::get(string key){
  83
  84         return  (*this)[key];
  85
  86 }
  87
  88 //**********************************************************************************************************************
  89